Genome sc|0001563

Genomics

Accession

NCBI Assembly:GCA_016717205.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.36%
• Contamination: 0.91%
• Quality: 91.81

Ribosomal and transfer RNA genes

• 3 16S rRNAs (up to 100.0%)
• 3 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

12.0 ×

Source

• BioSample: SAMN16426433
• BioSample: SAMN14825723

Other features

• G+C Content: 59.58%
• Coding Density: 88.95%
• Codon Table: 11
• N50: 664,729 bp
• Contigs: 20
• Largest Contig: 1,512,566 bp
• Assembly Length: 7,801,835 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-08-29

Location

Lat Lon: 55.329053 N 8.74336 E

Toponym

Geo Loc Name: Denmark: Ribe

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Ribe_18-Q3-R11-54 • activated sludge from wastewater treatment plant

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.6.0 • MIMS.me.wastewater.6.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

• SAMN16426433: MIMAG Metagenome-assembled Genome sample from Chloroflexota bacterium
• SAMN14825723: MIMS Environmental/Metagenome sample from activated sludge metagenome

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Metadata retrieved 29 days ago