Genome sc|0001568

Genomics

Accession

NCBI Assembly:GCA_963970155.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.12%
• Contamination: 0.22%
• Quality: 95.02

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMEA115347390
• BioSample: SAMEA8660016
• BioSample: ERS6344560

Other features

• G+C Content: 46.5%
• Coding Density: 94.16%
• Codon Table: 11
• N50: 1,209,613 bp
• Contigs: 1
• Largest Contig: 1,209,613 bp
• Assembly Length: 1,209,613 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Assembly with Flye, binning with MetaBAT2, and quality assessment with CheckM.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2019-11-13

Location

Geographic Location Latitude: 47.3

Geographic Location Longitude: 8.566667

Toponym

Geographic Location Country And Or Sea: Switzerland

Environment

Isolation Source: Lake Zurich

Environment Biome: freshwater lake

Environment Feature: fresh water

Broad Scale Environmental Context: freshwater ecosystem

Local Environmental Context: freshwater lake

Environmental Medium: freshwater lake biome

Other

Not detected

Package

Ena Checklist: ERC000047 • ERC000011

All retrieved samples

• SAMEA115347390: ZE-13nov19-LR-8
• SAMEA8660016: Freshwater metagenome from Zurich Lake, Switzerland; 5m depth, 13nov2019

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Metadata retrieved 4 months ago