Genome sc|0001609


Database

NCBI Assembly

Accession

GCA_031459385.1

Genomics

Accession
NCBI Assembly:GCA_031459385.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.67%
  • Contamination: 1.42%
  • Quality: 84.57
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 55.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 71.88%
  • Coding Density: 92.74%
  • Codon Table: 11
  • N50: 153,063 bp
  • Contigs: 59
  • Largest Contig: 405,785 bp
  • Assembly Length: 3,301,802 bp
  • Ambiguous Assembly Fraction: 0.00061%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-08
Location
Lat Lon: 25.44 N 98.46 E
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, JZ-2 • China: Tengchong, Yunnan
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment • JZ-2
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0Metagenome.environmental.1.0
Biosamplemodel: MIMAG.sediment • Metagenome or environmental
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

JZ-2_201808_metagenomics


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license