Genome sc|0001623


Database

NCBI Assembly

Accession

GCA_002898575.1

Genomics

Accession
NCBI Assembly:GCA_002898575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.09%
  • Contamination: 2.6%
  • Quality: 83.09
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 58.5%
  • Coding Density: 91.04%
  • Codon Table: 11
  • N50: 69,561 bp
  • Contigs: 75
  • Largest Contig: 172,999 bp
  • Assembly Length: 3,153,697 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-06-13
Location
Lat Lon: 35.3202 N 139.6500 E
Toponym
Geo Loc Name: Japan: Kanagawa, Yokosuka
Environment
Env Broad Scale: microbial mat
Env Local Scale: continuous-flow bioreactor
Env Medium: microbial mat material
Other
Depth: 0
Package
Ncbi Submission Package: MIMS.me.microbial.6.0
Biosamplemodel: MIMS.me.microbial
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Illumina MiSeq paired end sequencing of SAMD00093585
Illumina MiSeq paired end sequencing of SAMD00093584
Illumina MiSeq paired end sequencing of SAMD00093583
Illumina MiSeq paired end sequencing of SAMD00093582
Illumina MiSeq paired end sequencing of SAMD00093581
Illumina MiSeq paired end sequencing of SAMD00093580
Illumina MiSeq paired end sequencing of SAMD00093579


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