Candidatus Dolus sp.

collection_date

2018

INSDC secondary accession

SRS20385086

NCBI submission package

Metagenome.environmental.1.0

source_material_id

Ogal

organism

insect metagenome

host

Oulema gallaeciana

geo_loc_name

Germany

lat_lon

50.871 N 10.500 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2024-02-02

ENA-LAST-UPDATE

2024-02-05

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX23536579" alias="Ogal_run01" center_name="SUB14199516" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX23536579</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14199516">Ogal_run01</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenome of of Oulema gallaeciana</TITLE>
  <STUDY_REF accession="SRP488215">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP488215</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1072544</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extraction from beetle abdomen with subsequent assembly of bacterial symbiont</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS20385086">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS20385086</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|wierzjc@gmail.com">Candidatus Dolus symbiont of Oulema gallaeciana</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Ogal_run01</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20385086</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1797800</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX23536579&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX23536580" alias="Ogal_run02" center_name="SUB14199516" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX23536580</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14199516">Ogal_run02</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenome of of Oulema gallaeciana</TITLE>
  <STUDY_REF accession="SRP488215">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP488215</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1072544</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extraction from beetle abdomen with subsequent assembly of bacterial symbiont</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS20385086">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS20385086</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|wierzjc@gmail.com">Candidatus Dolus symbiont of Oulema gallaeciana</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Ogal_run02</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 3000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20385086</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1797800</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX23536580&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX23536580&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX23536581" alias="Ogal_minION" center_name="SUB14199516" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX23536581</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14199516">Ogal_minION</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenome of of Oulema gallaeciana</TITLE>
  <STUDY_REF accession="SRP488215">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP488215</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1072544</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extraction from beetle abdomen with subsequent assembly of bacterial symbiont</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS20385086">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS20385086</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|wierzjc@gmail.com">Candidatus Dolus symbiont of Oulema gallaeciana</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Ogal_minION</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20385086</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1797800</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX23536581&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX23536581&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>