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cognitis nomina
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Genomes
sc|0001891
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Genome sc|0001891
Name
Foliamicus numerosus
Ts
Database
INSDC Nucleotide
Accession
JAPYNE000000000
Genomics
Accession
INSDC Nucleotide:
JAPYNE000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
91.5%
Contamination:
1.9%
Quality:
82.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 79.0%)
1 23S rRNA (up to 61.0%)
tRNAs for 20 amino acids
Sequencing depth
20.0 ×
Source
BioSample: SAMN30287272
BioSample: SAMN13227199
BioSample: SAMN13227202
Other features
G+C Content:
63.76%
Coding Density:
89.58%
Codon Table:
11
N50:
49,677 bp
Contigs:
66
Largest Contig:
207,179 bp
Assembly Length:
2,210,887 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Completeness and contamination estimates are based on MIGA.
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2014-06
Location
Lat Lon:
18.816 S 147.633 E
Toponym
Geo Loc Name:
Australia: Davies Reef, Great Barrier Reef
Environment
Sample Type:
metagenomic assembly
Isolation Source:
sponge tissue, high temperature, low CO2 • sponge tissue
Env Broad Scale:
coral reef [
ENVO:00000150
]
Env Local Scale:
coral reef [
ENVO:00000150
]
Env Medium:
sponge
Other
Host:
Phyllospongia foliascens
Package
Ncbi Submission Package:
MIMAG.host-associated.6.0
•
Metagenome.environmental.1.0
Biosamplemodel:
MIMAG.host-associated
• Metagenome or environmental
All retrieved samples
SAMN30287272
: MIMAG Metagenome-assembled Genome sample from Gammaproteobacteria bacterium
SAMN13227199
: Metagenome or environmental sample from sponge metagenome
SAMN13227202
: Metagenome or environmental sample from sponge metagenome
Metadata retrieved
4 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN30287272
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2014-06
number_of_host_metagenomes
2
organism
Gammaproteobacteria bacterium
isolation-source
sponge tissue, high temperature, low CO2
env_broad_scale
coral reef [ENVO:00000150]
metagenomic
1
derived-from
SAMN13227199, SAMN13227202
environmental-sample
1
env_local_scale
coral reef [ENVO:00000150]
metagenome-source
sponge metagenome
isolate
r_cahl1
NCBI submission package
MIMAG.host-associated.6.0
experimental_conditions
high temperature, low CO2
host
Phyllospongia foliascens
geo_loc_name
Australia: Davies Reef, Great Barrier Reef
env_medium
sponge
lat_lon
18.816 S 147.633 E
sample-type
metagenomic assembly
BioSampleModel
MIMAG.host-associated
ENA-FIRST-PUBLIC
2022-08-12
ENA-LAST-UPDATE
2023-09-03
SAMN13227199
×
collection_date
2014-06
INSDC secondary accession
SRS5616643
NCBI submission package
Metagenome.environmental.1.0
Treatment
31.5_400_rep1
organism
sponge metagenome
isolation-source
sponge tissue
host
Phyllospongia foliascens
geo_loc_name
Australia: Davies Reef, Great Barrier Reef
samp_mat_process
microbes separated from host by filtration and centrifugation
lat_lon
18.816 S 147.633 E
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2019-11-06
ENA-LAST-UPDATE
2023-09-03
SAMN13227202
×
collection_date
2014-06
INSDC secondary accession
SRS5616646
NCBI submission package
Metagenome.environmental.1.0
Treatment
31.5_400_rep2
organism
sponge metagenome
isolation-source
sponge tissue
host
Phyllospongia foliascens
geo_loc_name
Australia: Davies Reef, Great Barrier Reef
samp_mat_process
microbes separated from host by filtration and centrifugation
lat_lon
18.816 S 147.633 E
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2019-11-06
ENA-LAST-UPDATE
2023-09-03
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