Genome sc|0001908

Genomics

Accession

NCBI Assembly:GCA_038141705.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.78%
• Contamination: 0.0%
• Quality: 98.78

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

0.001603664071 ×

Source

• BioSample: SAMN37862368
• BioSample: SAMN38034107

Other features

• G+C Content: 46.0%
• Coding Density: 90.23%
• Codon Table: 11
• N50: 1,680,473 bp
• Contigs: 6
• Largest Contig: 1,680,473 bp
• Assembly Length: 2,134,049 bp
• Ambiguous Assembly Fraction: 4.7e-05%

Submitter comments

Completeness and contamination were evaluated using CheckM v 1.1.3

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN37862368
• BioSample: SAMN38034107

Date

Collection Date: 2020-08-31

Location

Lat Lon: 27.445556 S 153.084444 E

Toponym

Geo Loc Name: Australia:Brisbane

Environment

Sample Type: metagenomic assembly

Isolation Source: estuary

Env Broad Scale: estuarine biome

Env Local Scale: estuary • brackish

Env Medium: estuarine water

Other

Depth: 0

Package

Ncbi Submission Package: MIMAG.water.6.0 • MIMS.me.water.6.0

Biosamplemodel: MIMAG.water • MIGS/MIMS/MIMARKS.water

All retrieved samples

• SAMN37862368: MIMAG Metagenome-assembled Genome sample from Betaproteobacteria bacterium
• SAMN38034107: BR1_August_replicate_01

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Metadata retrieved 2 months ago