Eutrophomonas brisbanensis^Ts

Citation

Formal styling

Eutrophomonas brisbanensis^Ts Prabhu et al., 2024

Effective publication

Prabhu et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:sfdglxu8 (validated)

Canonical URL

https://seqco.de/i:46738

Nomenclature

Rank

Species

Syllabication

bris.ban.en'sis

Etymology

N.L. fem. adj. brisbanensis, of or belonging to Brisbane

Nomenclatural type

NCBI Assembly: GCA_038141705.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Inferred to break down a wide range of organic carbon substrates (Chitin, Pectin, Cellulose and Starch) as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Encodes genes for urea uptake and degradation (ureABC, urtABCDE), phosphorus uptake and regulation (pho, pst), pyrroquinoline quinone (pqqC), nitrate uptake (NRT2), thiosulfate oxidation (sox) and sulphate assimilation (cys). There is noted absence of osmoregulation genes. Based on the genome reporting standards for MAGs , the estimated completeness 98.78%, contamination 0%, and the presence of the 16S (1,532 bp), and 23S (2, 933 bp) rRNA gene and 40 tRNAs. Type genome is defined as “high-quality” draft MAG, with one contig and genome size of 2.1 Mbps.

Classification

Bacteria » Pseudomonadota » Betaproteobacteria » Burkholderiales » Eutrophomonadaceae » Eutrophomonas » Eutrophomonas brisbanensis^Ts

Parent

Eutrophomonas

Genomics

Accession

NCBI Assembly:GCA_038141705.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.78%
• Contamination: 0.0%
• Quality: 98.78

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

0.001603664071 ×

Source

• BioSample: SAMN37862368
• BioSample: SAMN38034107

Other features

• G+C Content: 46.0%
• Coding Density: 90.23%
• Codon Table: 11
• N50: 1,680,473 bp
• Contigs: 6
• Largest Contig: 1,680,473 bp
• Assembly Length: 2,134,049 bp
• Ambiguous Assembly Fraction: 4.7e-05%

Submitter comments

Completeness and contamination were evaluated using CheckM v 1.1.3

Automated checks

Complete

See additional details

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Last modified 8 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_038141705.1
• Wikispecies: Eutrophomonas brisbanensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria 6 months ago

Submitted by

Chuvochina, Maria 3 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 3 months ago

Date of priority

2024-08-12 01:22 AM (UTC)