JSON

Genome sc|0001912

Name

“Nitrosopumilus brisbanensis”

Database

NCBI Assembly

Accession

GCA_038152885.1

Genomics

Accession
NCBI Assembly:GCA_038152885.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.72%
  • Contamination: 1.57%
  • Quality: 84.87
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 18 amino acids
Source
Other features
  • G+C Content: 35.0%
  • Coding Density: 92.48%
  • Codon Table: 11
  • N50: 27,692 bp
  • Contigs: 93
  • Largest Contig: 96,131 bp
  • Assembly Length: 1,297,295 bp
  • Ambiguous Assembly Fraction: 0.12%
Submitter comments
Completeness and contamination were evaluated using CheckM v 1.1.3
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2020-08-31
Location
Lat Lon: 27.505250 S 152.969917 E
Toponym
Geo Loc Name: Australia:Brisbane
Environment
Sample Type: metagenomic assembly
Isolation Source: estuary
Env Broad Scale: estuarine biome
Env Local Scale: estuary
Env Medium: estuarine water
Other
Depth: 0
Package
Ncbi Submission Package: MIMAG.water.6.0
Biosamplemodel: MIMAG.water
All retrieved samples
Metadata retrieved 19 days ago


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