Genome sc|0002318

Genomics

Accession

NCBI Assembly:GCA_037305845.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.3%
• Contamination: 7.7%
• Quality: 53.8

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 79.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 16 amino acids

Sequencing depth

23.0 ×

Source

• SRA: SRX23813132

Other features

• G+C Content: 40.5%
• Coding Density: 81.85%
• Codon Table: 11
• N50: 3,576,204 bp
• Contigs: 1
• Largest Contig: 3,576,204 bp
• Assembly Length: 3,576,204 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2019-10-26

Location

Lat Lon: 38.41 N 122.31 W

Toponym

Geo Loc Name: USA: California, Lake County

Environment

Sample Type: metagenomic assembly

Isolation Source: sediment of a seasonal wetland

Env Broad Scale: temperate woodland biome [ENVO:01000221]

Env Local Scale: lake bottom mud [ENVO:00005797]

Env Medium: lake bottom mud [ENVO:00005797]

Other

Depth: 80cm

Package

Ncbi Submission Package: MIMAG.soil.6.0

Biosamplemodel: MIMAG.soil

Additional Accessions

SAMN21157288

All retrieved samples

• SRS20635744: SRVP19_Freyarchaeia-1

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Metadata retrieved 5 days ago