Genome sc|0002319


Database

NCBI Assembly

Accession

GCA_016699775.1

Genomics

Accession
NCBI Assembly:GCA_016699775.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.69%
  • Quality: 96.55
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
18.5 ×
Source
Other features
  • G+C Content: 35.5%
  • Coding Density: 88.01%
  • Codon Table: 11
  • N50: 938,851 bp
  • Contigs: 1
  • Largest Contig: 938,851 bp
  • Assembly Length: 938,851 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 ABY1 (GCA_016699775.1) represents a complete, single contig genome with a size of 939 kbp. 
Please note that CheckM2 underestimates the completeness of this MAG and predicts only  96.03%.
Automated checks
Complete

Last modified 20 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-08-29
Location
Lat Lon: 56.742252 N 10.114475 E
Toponym
Geo Loc Name: Denmark: Mariagerfjord
Environment
Sample Type: metagenomic assembly
Isolation Source: activated sludge from Mari_18-Q3-R65-66 • activated sludge from wastewater treatment plant
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: Waste Water [ENVO:00002001]
Env Medium: Activated Sludge [ENVO:00002046]
Other
Depth: 1m
Package
Ncbi Submission Package: MIMAG.wastewater.5.0MIMS.me.wastewater.6.0
Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater
All retrieved samples

Metadata retrieved 20 days ago

Sequencing Experiments

Illumina sequencing of activated sludge metagenome
Nanopore sequencing of activated sludge metagenome


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