Genome sc|0000266


Database

NCBI Assembly

Accession

GCA_947581615.1

Genomics

Accession
NCBI Assembly:GCA_947581615.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.7%
  • Contamination: 3.3%
  • Quality: 80.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 71.38%
  • Coding Density: 91.82%
  • Codon Table: 11
  • N50: 52,189 bp
  • Contigs: 119
  • Largest Contig: 174,422 bp
  • Assembly Length: 3,341,153 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete

Last modified 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-07-11
Location
Lat Lon: 37.4965 N 122.1329 W
Toponym
Geo Loc Name: USA:South San Francisco, USA
Environment
Isolation Source: Site R2A soil
Gold Ecosystem Classification: Environmental | Terrestrial | Soil | Wetlands | Unclassified
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved 2 months ago

Sequencing Experiments

SRR5210316


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license