JSON

Genome sc|0000272

Name

Panguiarchaeum symbiosumTs

Database

NCBI Assembly

Accession

GCA_024720975.1

Genomics

Accession
NCBI Assembly:GCA_024720975.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.2%
  • Contamination: 0.0%
  • Quality: 96.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
17.0 ×
Source
Other features
  • G+C Content: 40.21%
  • Coding Density: 89.89%
  • Codon Table: 11
  • N50: 149,542 bp
  • Contigs: 29
  • Largest Contig: 409,838 bp
  • Assembly Length: 1,356,939 bp
  • Ambiguous Assembly Fraction: 0.0013%
Submitter comments
Genome quality including completeness, contamination was evaluated using CheckM v1.0.12 .Twenty marker proteins were excluded from the estimation due to the inherent absence in all Panguarchaeum symbiosum MAGs.16S and 23S rRNA sequences from MAGs were called using RNAmmer v1.2. tRNAs were detected using v2.0.9.
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
No BioSample metadata was found associated to this genome.
Metadata retrieved 10 months ago


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