Keywords: GSC:MIxS;MIMAG:5.0

collection_date

2017-09-29

organism

Elusimicrobium sp.

env_broad_scale

human

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the human metagenome BioSample: SAMN16797016

sequencing_technology

Illumina HiSeq 4000 2x150

environmental-sample

1

env_local_scale

human gut

metagenome-source

human gut metagenome

isolate

B40_60.fa

NCBI submission package

MIMAG.human-gut.5.0

host

Homo sapiens

geo_loc_name

South Africa: Bushbuckridge, Mpumalanga

env_medium

feces

lat_lon

24.82 S 31.26 E

isolation_source

stool

sample-type

metagenomic assembly

BioSampleModel

MIMAG.human-gut

ENA-FIRST-PUBLIC

2021-11-29

ENA-LAST-UPDATE

2021-12-02

collection_date

2017-09-29

INSDC secondary accession

SRS7718190

NCBI submission package

Metagenome.environmental.1.0

awigen_id

AB2587

organism

human gut metagenome

host

Homo sapiens

geo_loc_name

South Africa: Bushbuckridge, Mpumalanga

lat_lon

24.82 S 31.26 E

isolation_source

stool

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2021-02-01

ENA-LAST-UPDATE

2021-12-02

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX13238662" alias="B40" center_name="SUB10724629" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX13238662</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB10724629">B40</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>WGS sequencing of human gut metagenome</TITLE>
  <STUDY_REF accession="SRP292589">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP292589</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA678454</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted from stool via bead beating, libraries prepared using Illumina Nextera XT, sequenced 150bp PE reads on Illumina HiSeq 4000</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS7718190">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS7718190</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN16797016</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>B40</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS7718190</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1335364</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX13238662&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX13238662&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>