JSON

Genome sc|0000340

Name

Poriferisocius aerobiusTs

Database

NCBI Assembly

Accession

GCA_028278955.1

Genomics

Accession
NCBI Assembly:GCA_028278955.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.87%
  • Contamination: 0.85%
  • Quality: 90.62
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 80.0%)
  • 1 23S rRNA (up to 67.0%)
  • tRNAs for 19 amino acids
Sequencing depth
24.0 ×
Source
Other features
  • G+C Content: 66.68%
  • Coding Density: 92.33%
  • Codon Table: 11
  • N50: 15,477 bp
  • Contigs: 225
  • Largest Contig: 53,800 bp
  • Assembly Length: 2,477,953 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014-06
Location
Lat Lon: 18.816 S 147.633 E
Toponym
Geo Loc Name: Australia: Davies Reef, Great Barrier Reef
Environment
Sample Type: metagenomic assembly
Isolation Source: sponge tissue, high temperature high CO2
Env Broad Scale: coral reef [ENVO:00000150]
Env Local Scale: coral reef [ENVO:00000150]
Env Medium: sponge
Other
Host: Phyllospongia foliascens
Package
Ncbi Submission Package: MIMAG.host-associated.6.0
Biosamplemodel: MIMAG.host-associated
Additional Accessions
SAMN13227197, SAMN13227198, SAMN13227203
All retrieved samples
Metadata retrieved 10 months ago


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