Genome sc|0003496

Genomics

Accession

INSDC Nucleotide:JBLIRK000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.2%
• Contamination: 0.0%
• Quality: 91.2

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 72.0%)
• 1 23S rRNA (up to 52.0%)
• tRNAs for 19 amino acids

Sequencing depth

5.0 ×

Source

• BioSample: SAMN44502869

Other features

• G+C Content: 52.43%
• Coding Density: 93.13%
• Codon Table: 11
• N50: 52,861 bp
• Contigs: 80
• Largest Contig: 181,178 bp
• Assembly Length: 2,853,321 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

The quality assessment of the MAG, including completeness, contamination, and heterogeneity, was performed using CheckM v1.0.12. Additionally, rRNA genes (5S, 16S, and 23S) were predicted using RNAmmer v1.2.

Automated checks

Complete

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Last modified 5 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN44502869

Date

Collection Date: 2021-11

Location

Lat Lon: 22° 31′ 32″ N, 114° 1′ 35″ E

View map of sampling locations

Toponym

Geo Loc Name: China: Futian Mangrove National Nature Reserve, Shenzhen city, Guangdong province

Environment

Isolation Source: Mangrove wetland sediment sample collected at mudflat site MF1 in November 2021

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

• SAMN44502869: Metagenome or environmental sample from mangrove metagenome

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Metadata retrieved 5 months ago