JSON

Genome sc|0003572

Name

“Fontibacterium boreale”

Database

NCBI Assembly

Accession

GCA_903909545.1

Genomics

Accession
NCBI Assembly:GCA_903909545.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.4%
  • Contamination: 0.1%
  • Quality: 95.9
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 13 amino acids
Sequencing depth
1.0 ×
Source
Other features
  • G+C Content: 30.2%
  • Coding Density: 95.93%
  • Codon Table: 11
  • N50: 4,824 bp
  • Contigs: 243
  • Largest Contig: 22,600 bp
  • Assembly Length: 976,884 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
This is a metagenome-assembled genome (MAG) that was assembled with megahit and binned with metabat (binning parameters: min_len:1500,min_bin_size:10000,maxP:93,minS:50). The sequencing depth is unknown and was thus set to 1x. Completeness and contamination were assessed with CheckM. rRNA genes were predicted with barrnap v0.9, tRNA genes were predicted with tRNAscan v1.4. Although the MAG is of high quality (96.4% completeness), it does not contain any rRNA genes and tRNA genes for only 13 amino acids. 
Automated checks
Complete
Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-01-07/2018-01-10 • 2018-09-07 • 2018-09-08 • 2018-09-10
Location
Geographic Location Latitude: 64° 9′ 1.4″ N • 64° 7′ 23″ N • 64° 7′ 18″ N
Geographic Location Longitude: 18° 47′ 59″ E • 18° 46′ 50″ E • 18° 47′ 0.8″ E
View map of sampling locations
Toponym
Geographic Location Country And Or Sea: Sweden
Environment
Isolation Source: lake water
Environment Biome: lentic water body
Environment Feature: lake
Other
Ph: 6.32 • 5.67 • 5.46 • 6.19 • 5.77 • 5.26 • 5.56 • 5.38 • 4.76 • 4.95 • 5.58
Temperature: 14.4 • 10.9 • 8.5 • 5.3 • 13.8 • 10.5 • 6.9 • 4.3 • 4.1 • 4
Geographic Location Depth: 1.3 • 3.5 • 4 • 5 • 0.25 • 3.7 • 6.5 • 7 • 8
Package
Ena Checklist: ERC000047 • ERC000011 • ERC000024
All retrieved samples
Metadata retrieved 3 months ago

Sequencing Experiments

Raw reads: microbes_in_stratified_freshwaters_-_lake_Nästjärnen_(711940-164576)_sample_Umea1p1
Raw reads: microbes_in_stratified_freshwaters_-_lake_Nästjärnen_(711940-164576)_sample_Umea1p2
Raw reads: microbes_in_stratified_freshwaters_-_lake_Nästjärnen_(711940-164576)_sample_Umea1p3
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea2p1
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea2p2
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea2p3
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea3p1
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea3p2
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea3p3
Raw reads: microbes_in_stratified_freshwaters_-_lake_Björntjärnan_(711632-164487)_sample_Umea3p4


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