Candidatus Fonsibacter sp. assembled from Lake Zurich

BioSample Accession(s)

SAMEA115862066, ERS20608665

ENA-CHECKLIST

ERC000047

assembly software

Flye

binning software

Metabat2

organism

Candidatus Fonsibacter sp.

broad-scale environmental context

freshwater biome

assembly quality

Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

collection date

2019-04-03

sample derived from

ERS4065062

geographic location (longitude)

8.566667

taxonomic identity marker

multi-marker

binning parameters

coverage and kmer

completeness score

93.98

contamination score

0

environmental medium

natural lake

geographic location (latitude)

47.3

scientific_name

Candidatus Fonsibacter sp.

local environmental context

freshwater lake biome

ENA-FIRST-PUBLIC

2024-07-23

metagenomic source

freshwater metagenome

project name

PRJEB35640

ENA-LAST-UPDATE

2024-07-23

completeness software

CheckM

geographic location (country and/or sea)

Switzerland

isolation_source

freshwater lake

Freshwater metagenome from Lake Zurich, Switzerland; 5 m depth, 03-Apr-2019

BioSample Accession(s)

SAMEA6265454, ERS4065062

ENA-CHECKLIST

ERC000024

organism

lake water metagenome

broad-scale environmental context

freshwater lake

collection date

2019-03-03

geographic location (longitude)

8.578777

environmental medium

fresh water

geographic location (latitude)

47.300659

scientific_name

lake water metagenome

investigation type

metagenome

water environmental package

water

local environmental context

large lake

depth

5

project name

ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-03-12-2019-09:06:06:235-971

sequencing method

Oxford Nanopore and Illumina NovaSeq 6000

file name

ZE_Sp19_FDME192240424-1a_HNH33DSXX_L3

geographic location (country and/or sea)

Switzerland

Metadata as EBI XML

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  </IDENTIFIERS>
  <TITLE>PromethION sequencing</TITLE>
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Metadata as EBI XML

<EXPERIMENT_SET>
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  </IDENTIFIERS>
  <TITLE>Illumina NovaSeq 6000 paired end sequencing</TITLE>
  <STUDY_REF accession="ERP118719">
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      <PRIMARY_ID>ERP118719</PRIMARY_ID>
      <SECONDARY_ID>PRJEB35640</SECONDARY_ID>
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    <LIBRARY_DESCRIPTOR>
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      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="291"/>
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    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
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