BioSample Accession(s)

SAMN12662246, SRS5367585

strain

HO-Ch2

collection_date

2016-06

type-material

type strain of Actinotalea subterranea

INSDC secondary accession

SRS5367585

NCBI submission package

Microbe.1.0

identified_by

E.M. Semenova, D.S. Sokolova

organism

Actinotalea subterranea

geo_loc_name

Russia: Tatarstan, Nurlat Region, the Cheremukhovskoe oilfield

collected_by

E.M. Semenova

sample_type

pure culture

isolation_source

injection water

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2019-08-30

ENA-LAST-UPDATE

2022-02-27

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX13217944" alias="HO-Ch2" center_name="SUB10716918" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX13217944</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB10716918">HO-Ch2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>SRA of Actinotalea sp. HO-Ch2</TITLE>
  <STUDY_REF accession="SRP221216">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP221216</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA563088</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Sequencing libraries were generated using NEBNext Ultra DNA Library Prep Kit for Illumina (NEB, USA) following manufacturers recommendations and index codes were added to attribute sequences to each sample</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5367585">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5367585</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN12662246</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>HO-Ch2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5367585</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1334469</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX13217944&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX13217944&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX6825136" alias="HO-Ch2" center_name="SUB6283798" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX6825136</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6283798">HO-Ch2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>SRA of Actinotalea sp. HO-Ch2</TITLE>
  <STUDY_REF accession="SRP221216">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP221216</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA563088</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Libraries were constructed with the NEBNext DNA library prep reagent set for Illumina, per the kits protocol.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5367585">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5367585</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN12662246</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>HO-Ch2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5367585</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA959757</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6825136&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6825136&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>