Anaerobic digester fluid microbial communities from University of British Columbia, Vancouver, Canada

BioSample Accession(s)

SAMN44348674, SRS22965436

collection_date

2021-08-11

INSDC secondary accession

SRS22965436

NCBI submission package

Metagenome.environmental.1.0

organism

bioreactor metagenome

geo_loc_name

Canada: Vancouver, BC

GOLD Ecosystem Classification

Engineered | Bioreactor | Anaerobic | Unclassified | Unclassified

lat_lon

49.263236 N 123.248945 W

isolation_source

Anaerobic digester fluid

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2024-10-18

ENA-LAST-UPDATE

2024-10-21

BioSample Accession(s)

SRS22961605, SAMN22961605, SRS10973400

source_name

promastigote

strain

MHOM/GT/2001/U1103

tissue

promastigote

cross-linking

non-cross-linked

uv energy

0 mJ/cm2

ncbi_package

Generic.1.0

BioSample Accession(s)

SRS22961606, SAMN22961606, SRS10973399

source_name

promastigote

strain

MHOM/GT/2001/U1103

tissue

promastigote

cross-linking

non-cross-linked

uv energy

0 mJ/cm2

ncbi_package

Generic.1.0

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR31065934" alias="JGI-SRA-228254" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR31065934</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-228254</EXTERNAL_ID>
    <SUBMITTER_ID namespace="">JGI-SRA-228254</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Sequel IIe sequencing; Anaerobic digester UBC_BulkDNA</TITLE>
  <EXPERIMENT_REF accession="SRX26449899">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX26449899</PRIMARY_ID>
      <EXTERNAL_ID namespace="JGI">JGI-SRA-228254</EXTERNAL_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1994845</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP540023</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS22965436</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR31065934&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR31065934&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>loader</TAG>
      <VALUE>latf-load</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>run_id</TAG>
      <VALUE>2595</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>read_type</TAG>
      <VALUE>ccs</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>pi_orcid</TAG>
      <VALUE>https://orcid.org/0000-0003-3705-6078</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>pi_name</TAG>
      <VALUE>Ziels, Ryan</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>pi_email</TAG>
      <VALUE>ziels@mail.ubc.ca</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>pi_organization</TAG>
      <VALUE>University of British Columbia</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2024-10-27</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2024-10-27</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>