JSON

Genome sc|0000400

Name

Pantoea varia

Database

NCBI Assembly

Accession

GCF_900115075.1

Genomics

Accession
NCBI Assembly:GCF_900115075.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.49%
  • Quality: 97.55
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
269.0 ×
Source
Other features
  • G+C Content: 55.18%
  • Coding Density: 87.29%
  • Codon Table: 11
  • N50: 568,987 bp
  • Contigs: 12
  • Largest Contig: 2,306,547 bp
  • Assembly Length: 4,751,258 bp
  • Ambiguous Assembly Fraction: 0.012%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package: MIGS.ba.6.0
Biosamplemodel: MIGS.ba
All retrieved samples
Metadata retrieved 3 months ago


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