SeqCode Registry
cognitis nomina
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Genomes
sc|0000400
JSON
Genome sc|0000400
Name
Pantoea varia
Database
NCBI Assembly
Accession
GCF_900115075.1
Genomics
Accession
NCBI Assembly:
GCF_900115075.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.49%
Quality:
97.55
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 18 amino acids
Sequencing depth
269.0 ×
Source
SRA: SRX2156480
Other features
G+C Content:
55.18%
Coding Density:
87.29%
Codon Table:
11
N50:
568,987 bp
Contigs:
12
Largest Contig:
2,306,547 bp
Assembly Length:
4,751,258 bp
Ambiguous Assembly Fraction:
0.012%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
Sample Metadata
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package:
MIGS.ba.5.0
Biosamplemodel:
MIGS.ba
All retrieved samples
SRS1686443
: Pantoea sp. OV426
Metadata retrieved
6 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS1686443
×
Retrieved via SRX2156480
Keywords: GSC:MIxS;MIGS:5.0
strain
OV426
INSDC secondary accession
SRS1686443
NCBI submission package
MIGS.ba.5.0
organism
Pantoea sp. OV426
BioSampleModel
MIGS.ba
ENA-FIRST-PUBLIC
2016-07-22
ENA-LAST-UPDATE
2016-09-21
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