Genome sc|0000404

Genomics

Accession

NCBI Assembly:GCA_002454735.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.6%
• Contamination: 0.37%
• Quality: 95.75

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 17 amino acids

Sequencing depth

16.04 ×

Source

• BioSample: SAMN06455594
• BioSample: SAMN03270585

Other features

• G+C Content: 56.3%
• Coding Density: 88.01%
• Codon Table: 11
• N50: 123,017 bp
• Contigs: 41
• Largest Contig: 267,044 bp
• Assembly Length: 3,639,900 bp
• Ambiguous Assembly Fraction: 0.11%

Submitter comments

Quality assessed with CheckM 1 v. 0.18 (completeness = 97.6%; contamination = 0.37%), with the Enterobacteriaceae family marker set consisting of 876 markers, and CheckM 2 v. 0.1.3 (completeness = 98.54%; contamination = 0.0%) with a specific neural network model. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2013-07-25

Location

Lat Lon: 40.80 N 73.91 W

Toponym

Geo Loc Name: USA:New York City

Environment

Env Material: metal

Sample Type: metagenomic assembly

Env Biome: city

Isolation Source: metal

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental

All retrieved samples

• SAMN06455594: Uncultivated Pantoea sp. UBA6694 genome recovered from SRX822591
• SAMN03270585: Metagenome or environmental sample from terrestrial metagenome

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Metadata retrieved 10 months ago