Pantoea bituminis

Citation

Formal styling

Pantoea bituminis Crosby et al., 2023

Effective publication

Crosby et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xfaladud (validated)

Canonical URL

https://seqco.de/i:31359

Nomenclature

Rank

Species

Syllabication

bi.tu.mi'nis

Etymology

N.L. gen. n. bituminis, of bitumen, asphalt

Nomenclatural type

NCBI Assembly: GCF_018842675.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This species currently consists of the genome of a single strain, EnvD, which was isolated from asphalt in Jerusalem, Israel. The most closely related species, named Pantoea mediterraneensis_A in GTDB (GCF_014946725.1) share an ANI value with EnvD below species delineation guidelines, revealing that the two genomes represent two distinct species.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea bituminis

Parent

Pantoea ncbigtdb

Genomics

Accession

NCBI Assembly:GCF_018842675.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 98.81%
• Contamination: 0.19%
• Quality: 97.86

Ribosomal and transfer RNA genes

• 7 16S rRNAs (up to 100.0%)
• 7 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

144.0 ×

Source

• BioSample: SAMN18876904

Other features

• G+C Content: 51.15%
• Coding Density: 84.71%
• Codon Table: 11
• N50: 4,008,183 bp
• Contigs: 5
• Largest Contig: 4,008,183 bp
• Assembly Length: 5,222,323 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

See additional details

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Last modified 6 days ago

Metadata

Outside links and data sources

• NCBI Taxonomy: 2831036
• GTDB Genome: GCF_018842675.1
• GTDB Tree: s__Pantoea bituminis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Pantoea bituminis (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike over 1 year ago

Submitted by

Palmer, Marike over 1 year ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Rodriguez-R, Luis M 12 months ago

Date of priority

2023-11-15 01:31 PM (UTC)