Genome sc|0000412

Genomics

Accession

NCBI Assembly:GCF_002920175.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.99%
• Contamination: 0.18%
• Quality: 99.09

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

72.0 ×

Source

• SRA: SRX3652526

Other features

• G+C Content: 57.91%
• Coding Density: 86.24%
• Codon Table: 11
• N50: 347,536 bp
• Contigs: 70
• Largest Contig: 524,186 bp
• Assembly Length: 5,351,126 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

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Last modified 10 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN04287067

Date

Collection Date: 2015

Location

Lat Lon: 38.984652 N 77.094709 W

Toponym

Geo Loc Name: USA

Environment

Env Biome: human-associated habitat

Other

Not detected

Package

Ncbi Submission Package: MIGS.ba.6.0

Biosamplemodel: MIGS.ba

All retrieved samples

• SAMN04287067: Pantoea sp. PSNIH6

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Metadata retrieved 10 days ago