Metadata as EBI XML
<EXPERIMENT_SET>
<EXPERIMENT accession="SRX3652526" alias="MISEQ_PSNIH6_L11324044" center_name="NISC" broker_name="NCBI">
<IDENTIFIERS>
<PRIMARY_ID>SRX3652526</PRIMARY_ID>
<SUBMITTER_ID namespace="NISC">MISEQ_PSNIH6_L11324044</SUBMITTER_ID>
</IDENTIFIERS>
<TITLE>Illumina MiSeq Sequencing of Pantoea sp. PSNIH6 Genomic Paired-end Library</TITLE>
<STUDY_REF accession="SRP131199" refcenter="NISC">
<IDENTIFIERS>
<PRIMARY_ID>SRP131199</PRIMARY_ID>
<EXTERNAL_ID namespace="BioProject">PRJNA430813</EXTERNAL_ID>
</IDENTIFIERS>
</STUDY_REF>
<DESIGN>
<DESIGN_DESCRIPTION>Illumina MiSeq 2x300 sequencing of Pantoea sp. PSNIH6 whole genome paired-end library</DESIGN_DESCRIPTION>
<SAMPLE_DESCRIPTOR accession="SRS2916983">
<IDENTIFIERS>
<PRIMARY_ID>SRS2916983</PRIMARY_ID>
<EXTERNAL_ID namespace="BioSample">SAMN04287067</EXTERNAL_ID>
</IDENTIFIERS>
</SAMPLE_DESCRIPTOR>
<LIBRARY_DESCRIPTOR>
<LIBRARY_NAME>PSNIH6_L11324044</LIBRARY_NAME>
<LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
<LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
<LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
<LIBRARY_LAYOUT>
<PAIRED NOMINAL_LENGTH="500" NOMINAL_SDEV="50"/>
</LIBRARY_LAYOUT>
<LIBRARY_CONSTRUCTION_PROTOCOL>Nextera DNA Sample Preparation Kit</LIBRARY_CONSTRUCTION_PROTOCOL>
</LIBRARY_DESCRIPTOR>
<SPOT_DESCRIPTOR>
<SPOT_DECODE_SPEC>
<SPOT_LENGTH>600</SPOT_LENGTH>
<READ_SPEC>
<READ_INDEX>0</READ_INDEX>
<READ_CLASS>Application Read</READ_CLASS>
<READ_TYPE>Forward</READ_TYPE>
<BASE_COORD>1</BASE_COORD>
</READ_SPEC>
<READ_SPEC>
<READ_INDEX>1</READ_INDEX>
<READ_CLASS>Application Read</READ_CLASS>
<READ_TYPE>Reverse</READ_TYPE>
<BASE_COORD>301</BASE_COORD>
</READ_SPEC>
</SPOT_DECODE_SPEC>
</SPOT_DESCRIPTOR>
</DESIGN>
<PLATFORM>
<ILLUMINA>
<INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
</ILLUMINA>
</PLATFORM>
<PROCESSING>
<PIPELINE>
<PIPE_SECTION>
<STEP_INDEX>1</STEP_INDEX>
<PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
<PROGRAM>RTA</PROGRAM>
<VERSION>1.18.54</VERSION>
</PIPE_SECTION>
</PIPELINE>
</PROCESSING>
<EXPERIMENT_LINKS>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-SAMPLE</DB>
<ID>SRS2916983</ID>
</XREF_LINK>
</EXPERIMENT_LINK>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-SUBMISSION</DB>
<ID>SRA656343</ID>
</XREF_LINK>
</EXPERIMENT_LINK>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-FASTQ-FILES</DB>
<ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3652526&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
</XREF_LINK>
</EXPERIMENT_LINK>
<EXPERIMENT_LINK>
<XREF_LINK>
<DB>ENA-SUBMITTED-FILES</DB>
<ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3652526&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
</XREF_LINK>
</EXPERIMENT_LINK>
</EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>
Metadata retrieved about 1 month ago