JSON

Genome sc|0000439

Name

Hydrothermus pacificusTs

Database

NCBI Assembly

Accession

GCA_002011615.1

Genomics

Accession
NCBI Assembly:GCA_002011615.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.53%
  • Contamination: 0.0%
  • Quality: 91.53
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
42.1 ×
Source
Other features
  • G+C Content: 34.75%
  • Coding Density: 95.09%
  • Codon Table: 11
  • N50: 176,033 bp
  • Contigs: 19
  • Largest Contig: 342,452 bp
  • Assembly Length: 2,059,798 bp
  • Ambiguous Assembly Fraction: 0.0018%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2011-07-12
Location
Lat Lon: 47.76 N 127.76 W
Toponym
Geo Loc Name: Pacific Ocean
Environment
Env Material: water
Sample Type: metagenomic assembly
Env Biome: hydrothermal fluid
Isolation Source: basaltic crustal fluids
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Hydrothermal vents | Diffuse flow
Other
Depth: 454
Package
Ncbi Submission Package: Microbe.1.0 • MIMARKS.survey.sediment.6.0
Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.sediment
All retrieved samples
Metadata retrieved 10 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license