Genome sc|0000451


Database

NCBI Assembly

Accession

GCA_002869225.1

Genomics

Accession
NCBI Assembly:GCA_002869225.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.56%
  • Contamination: 3.5%
  • Quality: 79.06
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 32.77%
  • Coding Density: 92.06%
  • Codon Table: 11
  • N50: 33,603 bp
  • Contigs: 148
  • Largest Contig: 182,030 bp
  • Assembly Length: 2,928,565 bp
  • Ambiguous Assembly Fraction: 0.0055%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015
Location
Lat Lon: 37.8629 N 122.3132 W
Toponym
Geo Loc Name: USA: Berkeley, CA, marina
Environment
Sample Type: metagenomic assembly
Isolation Source: enrichment from estuary sediment • estuary sediment; 7% salinity (w/v NaCl) perchlorate enrichment • estuary sediment; 5% salinity (w/v NaCl) perchlorate enrichment
Other
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: Microbe.1.0Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Metagenomic sequencing of 7% NaCl (w/v) perchlorate enrichment
Metagenomic sequencing of 5% NaCl (w/v) perchlorate enrichment


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