JSON

Genome sc|0000465

Name

Doriopsillibacter californiensisTs

Database

NCBI Assembly

Accession

GCA_030386295.1

Genomics

Accession
NCBI Assembly:GCA_030386295.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 94.12%
  • Contamination: 0.84%
  • Quality: 89.92
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
395.0 ×
Source
Other features
  • G+C Content: 46.79%
  • Coding Density: 91.32%
  • Codon Table: 11
  • N50: 455,906 bp
  • Contigs: 5
  • Largest Contig: 621,832 bp
  • Assembly Length: 1,532,643 bp
  • Ambiguous Assembly Fraction: 0.0065%
Automated checks
Complete
Last modified 6 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-06-21
Location
Lat Lon: 37.49484083 N 122.49944278 W • 37.494841 N 122.499443 W
Toponym
Geo Loc Name: USA: Pillar Point, CA • USA: California, Pillar Point Harbor
Environment
Isolation Source: co-assembly of nearly identical multiple single-cells amplified by MDA; isolated from nudibranch mantle • tide pools
Env Broad Scale: tide pools
Env Local Scale: nudibranch
Env Medium: nudibranch mantle
Other
Host: Doriopsilla fulva
Package
Ncbi Package: Microbe.1.0
Ncbi Submission Package: MISAG.host-associated.6.0
Biosamplemodel: MISAG.host-associated
All retrieved samples
Metadata retrieved 6 days ago


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