Genome sc|0000780

Genomics

Accession

NCBI Assembly:GCA_019262145.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.6%
• Contamination: 0.0%
• Quality: 99.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

300.0 ×

Source

• BioSample: SAMN19693782
• BioSample: SAMN19296169

Other features

• G+C Content: 43.73%
• Coding Density: 90.65%
• Codon Table: 11
• N50: 1,516,968 bp
• Contigs: 1
• Largest Contig: 1,516,968 bp
• Assembly Length: 1,516,968 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-04-20

Location

Lat Lon: 54.10 N 12.74 E

Toponym

Geo Loc Name: Germany: Trebel valley

Environment

Isolation Source: Trebel valley fen

Env Broad Scale: ENVO:00000232

Env Local Scale: ENVO:00000232

Env Medium: ENVO:00000232

Other

Depth: 0.25 m

Rel To Oxygen: anaerobe

Package

Ncbi Submission Package: MIMAG.soil.5.0 • MIMS.me.soil.5.0

Biosamplemodel: MIMAG.soil • MIGS/MIMS/MIMARKS.soil

All retrieved samples

• SAMN19693782: MIMAG Metagenome-assembled Genome sample from Candidatus Methanogranum gryphiswaldense
• SAMN19296169: MIMS Environmental/Metagenome sample from peat metagenome

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Metadata retrieved 10 months ago