Genome sc|0000780


Database

NCBI Assembly

Accession

GCA_019262145.1

Genomics

Accession
NCBI Assembly:GCA_019262145.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.6%
  • Contamination: 0.0%
  • Quality: 99.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
300.0 ×
Source
Other features
  • G+C Content: 43.73%
  • Coding Density: 90.65%
  • Codon Table: 11
  • N50: 1,516,968 bp
  • Contigs: 1
  • Largest Contig: 1,516,968 bp
  • Assembly Length: 1,516,968 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-04-20
Location
Lat Lon: 54.10 N 12.74 E
Toponym
Geo Loc Name: Germany: Trebel valley
Environment
Isolation Source: Trebel valley fen
Env Broad Scale: ENVO:00000232
Env Local Scale: ENVO:00000232
Env Medium: ENVO:00000232
Other
Depth: 0.25 m
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIMAG.soil.6.0MIMS.me.soil.5.0
Biosamplemodel: MIMAG.soil • MIGS/MIMS/MIMARKS.soil
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Long reads
RNA-Seq of enriched peatland sample


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