Genome sc|0000791

Name

Spongiicolonus versatilis^Ts

Database

NCBI Assembly

Accession

GCA_028286165.1

Genomics

Accession

NCBI Assembly:GCA_028286165.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 81.15%
Contamination: 1.22%
Quality: 75.05

Ribosomal and transfer RNA genes

2 16S rRNAs (up to 26.0%)
0 23S rRNAs
tRNAs for 15 amino acids

Sequencing depth

10.0 ×

Source

See all sources

Other features

G+C Content: 64.61%
Coding Density: 93.95%
Codon Table: 11
N50: 10,525 bp
Contigs: 218
Largest Contig: 35,943 bp
Assembly Length: 1,830,795 bp
Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness was estimates with CheckM, which might underestimate completeness for divergent symbiont clades

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2014-08

Location

Lat Lon: 18.83 S 147.68 E

Toponym

Geo Loc Name: Australia: Davies Reef, Great Barrier Reef S13 • Australia: Davies Reef, Great Barrier Reef S14 • Australia: Davies Reef, Great Barrier Reef S15

Environment

Env Material: Seawater

Env Biome: Sponge

Isolation Source: sponge tissue

Other

Host: Stylissa flabelliformis

Depth: 10-15m

Package

Ncbi Submission Package: MIMS.me.host-associated.6.0

All retrieved samples

Metadata retrieved 10 months ago

© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license