Genome sc|0000807

Genomics

Accession

NCBI Assembly:GCA_035175045.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.84%
• Contamination: 0.61%
• Quality: 95.79

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 95.7%)
• 1 23S rRNA (up to 55.0%)
• tRNAs for 20 amino acids

Sequencing depth

53.43 ×

Source

• SRA: SRX10234965

Other features

• G+C Content: 62.4%
• Coding Density: 91.32%
• Codon Table: 11
• N50: 50,176 bp
• Contigs: 65
• Largest Contig: 267,429 bp
• Assembly Length: 1,604,348 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were estimated using CheckM2. Ribosomal and transfer RNAs were detected with PGAP. 23S rRNA gene completeness was estimated using the average 23S rRNA gene length of four related species: Aeropyrum pernix, Aeropyrum camini, Acidilobus saccharovorans and Caldisphaera lagunensis.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2015-04-29

Location

Lat Lon: 22.1802 S 176.6012 W

Toponym

Geo Loc Name: Pacific Ocean: Mariner vent site

Environment

Isolation Source: hydrothermal vent deposit Mariner 2

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

• SRS5961188: Deep-sea hydrothermal vent metagenome

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Metadata retrieved 5 months ago