SeqCode Registry
cognitis nomina
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Genomes
sc|0000814
JSON
Genome sc|0000814
Name
Enterovibrio baiacui
Database
NCBI Assembly
Accession
GCF_004120195.1
Genomics
Accession
NCBI Assembly:
GCF_004120195.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
1.9%
Quality:
90.5
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
124.0 ×
Source
BioSample: SAMN10744211
Other features
G+C Content:
48.0%
Coding Density:
86.5%
Codon Table:
11
N50:
283,124 bp
Contigs:
52
Largest Contig:
581,255 bp
Assembly Length:
5,371,326 bp
Ambiguous Assembly Fraction:
1.9e-05%
Automated checks
Complete
Last modified
about 1 month ago
Sample Metadata
BioSample entries
BioSample: SAMN10744211
Date
Collection Date:
2016-05
Location
Not detected
Toponym
Geo Loc Name:
Brazil: Rio de Janeiro, Arraial do Cabo
Environment
Sample Type:
cell culture
Isolation Source:
liver
Other
Host:
Sphoeroides spengleri
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN10744211
: Microbe sample from Enterovibrio baiacu
Metadata retrieved
about 1 month ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN10744211
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN10744211
strain
A649
collection_date
2016-05
type-material
type material of Enterovibrio baiacu
NCBI submission package
Microbe.1.0
organism
Enterovibrio baiacu
host
Sphoeroides spengleri
geo_loc_name
Brazil: Rio de Janeiro, Arraial do Cabo
collected_by
Gustavo Pitta Reis de Azevedo
sample_type
cell culture
isolation_source
liver
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2019-01-15
ENA-LAST-UPDATE
2021-02-28
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