Keywords: GSC:MIxS;MIGS:6.0

BioSample Accession(s)

SAMN37218445, SRS18839172

collection_date

2023-07

isol_growth_condt

NA

ref_biomaterial

NA

INSDC secondary accession

SRS18839172

organism

Candidatus Sororendozoicomonas aggregata

env_broad_scale

coral reef

env_local_scale

NA

isolate

Pac_P3-11-1

NCBI submission package

MIGS.ba.host-associated.6.0

host

Pocillopora acuta

num_replicons

NA

geo_loc_name

Australia: Orpheus Island

env_medium

coral tissue

lat_lon

18.604528 S 146.490083 E

BioSampleModel

MIGS/MIMS/MIMARKS.host-associated

ENA-FIRST-PUBLIC

2023-09-14

ENA-LAST-UPDATE

2024-02-05

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX21689336" alias="Pac_P3-11-1" center_name="SUB13808988" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX21689336</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB13808988">Pac_P3-11-1</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads for whole-genome sequencing of Pocillopora acuta-associated bacteria</TITLE>
  <STUDY_REF accession="SRP439335">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP439335</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA974967</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Raw reads for whole-genome sequencing of Pocillopora acuta-associated bacteria</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS18839172">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS18839172</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|justin.maire@gmail.com">Pac_P3-11-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Pac_P3-11-1</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS18839172</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1708364</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX21689336&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX21689336&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>