Genome sc|0000850

Genomics

Accession

NCBI Assembly:GCA_031528575.1

Cultures

Strain sc|0038624

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 97.13%
• Contamination: 0.88%
• Quality: 92.73

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

61.0 ×

Source

• BioSample: SAMN37218445

Other features

• G+C Content: 46.7%
• Coding Density: 79.58%
• Codon Table: 11
• N50: 37,409 bp
• Contigs: 201
• Largest Contig: 102,874 bp
• Assembly Length: 4,041,637 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were assessed with CheckM v1.2.2
rRNA genes were detected via annotation with Bakta v1.7.0

Automated checks

Complete

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Last modified 3 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN37218445

Date

Collection Date: 2023-07

Location

Lat Lon: 18° 36′ 16″ S, 146° 29′ 24″ E

View sampling location map

Toponym

Geo Loc Name: Australia: Orpheus Island

Environment

Env Broad Scale: coral reef

Env Local Scale: NA

Env Medium: coral tissue

Other

Host: Pocillopora acuta

Isol Growth Condt: NA

Package

Ncbi Submission Package: MIGS.ba.host-associated.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN37218445: MIGS Cultured Bacterial/Archaeal sample from Candidatus Sororendozoicomonas aggregata

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Metadata retrieved 5 months ago