Genome sc|0000967

Genomics

Accession

INSDC Nucleotide:JAVKIA000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.43%
• Contamination: 0.93%
• Quality: 85.78

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 43.0%)
• tRNAs for 21 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN35168731
• BioSample: SAMN35165528

Other features

• G+C Content: 69.39%
• Coding Density: 92.18%
• Codon Table: 11
• N50: 67,768 bp
• Contigs: 75
• Largest Contig: 213,826 bp
• Assembly Length: 2,761,254 bp
• Ambiguous Assembly Fraction: 0.0018%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2017-09

Location

Lat Lon: 25.44 N 98.46 E

Toponym

Geo Loc Name: China: Tengchong county, Yunnan, JZ-2 • China: Tengchong, Yunnan

Environment

Sample Type: metagenomic assembly

Isolation Source: Hot spring sediment • JZ-2

Env Broad Scale: Hot spring

Env Local Scale: Hot spring sediment

Env Medium: Hot spring sediment

Other

Depth: Surface

Package

Ncbi Submission Package: MIMAG.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.sediment • Metagenome or environmental

All retrieved samples

• SAMN35168731: MIMAG Metagenome-assembled Genome sample from Armatimonadota bacterium
• SAMN35165528: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved about 2 months ago