Poriferisodalis multihospitum^Ts

Citation

Formal styling

Poriferisodalis multihospitum^Ts Nguyen et al., 2023

Effective publication

Nguyen et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:v1sky3wb (validated)

Canonical URL

https://seqco.de/i:23660

Nomenclature

Rank

Species

Syllabication

mul.ti.hos.pi'tum

Etymology

L. masc. adj. multus, numerous; L. masc. n. hospes, a host; N.L. masc. adj. multihospitum, one who lives with multiple hosts

Nomenclatural type

NCBI Assembly: GCA_028278755.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Sponge symbiont found in many sponges species and predict to be a facultatively aerobic chemoorganoheterotroph and capable of assimilating nitrogen, sulfur, and carbon from diverse sources.

Classification

Bacteria » Actinomycetota » Acidimicrobiia » Acidimicrobiales » Poriferisodalaceae » Poriferisodalis » Poriferisodalis multihospitum^Ts

Parent

Poriferisodalis gtdb

Genomics

Accession

NCBI Assembly:GCA_028278755.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.88%
• Contamination: 1.71%
• Quality: 83.33

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 80.0%)
• 1 23S rRNA (up to 67.0%)
• tRNAs for 20 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN31047477

Other features

• G+C Content: 67.2%
• Coding Density: 92.15%
• Codon Table: 11
• N50: 12,288 bp
• Contigs: 360
• Largest Contig: 79,380 bp
• Assembly Length: 3,142,008 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

We have not be able to reconstruct a better 16S rRNA gene sequence, but phylogenetic placement of the 16S rRNA gene is robust (see Nguyen et al., 2023).

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_028278755.1
• GTDB Tree: s__Poriferisodalis multihospitum
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Poriferisodalis multihospitum (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Thomas, Torsten about 2 years ago

Submitted by

Thomas, Torsten over 1 year ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike over 1 year ago

Validated by

Palmer, Marike over 1 year ago

Date of priority

2023-08-25 02:22 PM (UTC)