Brevundimonas phytovorans

Citation

Formal styling

Brevundimonas phytovorans Díaz-García et al., 2024

Effective publication

Díaz-García et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:-kiq_w89 (validated)

Canonical URL

https://seqco.de/i:24099

Nomenclature

Rank

Species

Syllabication

phy.to.vo'rans.

Etymology

Gr. neut. n. phyton, plant; L. pres. part. vorans, devouring, destroying; N.L. fem. part. adj. phytovorans, plant-devouring

Nomenclatural type

INSDC Nucleotide: CP119309.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species established on the basis of MiGA taxonomic novelty analyses, AAI, dDDH, 16S rRNA gene phylogenetic reconstruction and the type material is the genome MAG_1865. Genomic metrics include ANI (91.28), AAI (87.92) and dDDH d4 (40.3). The MAG was reconstructed from lignocellulolytic bacterial consortium and encoded for 39 CAZymes, 6 of them involved in lignocellulose degradation. In addition, putative genes for protocatechuate and phtalate catabolism were found within the MAG.

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Caulobacterales » Caulobacteraceae » Brevundimonas » Brevundimonas phytovorans

Parent

Brevundimonas gtdb

Genomics

Accession

INSDC Nucleotide:CP119309.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.68%
• Contamination: 0.16%
• Quality: 98.88

Ribosomal and transfer RNA genes

• 3 16S rRNAs (up to 100.0%)
• 3 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

20.0 ×

Source

• BioSample: SAMN33481872
• BioSample: SAMN33438288

Other features

• G+C Content: 67.47%
• Coding Density: 89.69%
• Codon Table: 11
• N50: 3,220,063 bp
• Contigs: 1
• Largest Contig: 3,220,063 bp
• Assembly Length: 3,220,063 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Dfast was used to identify rRNA genes. Completion and contamination were estimated by CheckM.

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Tree: s__Brevundimonas phytovorans
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Brevundimonas phytovorans (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 9 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Díaz-García, Laura almost 2 years ago

Submitted by

Díaz-García, Laura over 1 year ago

Curators

• Palmer, Marike (nomenclature) (genomics)

Endorsed by

Palmer, Marike over 1 year ago

Validated by

Palmer, Marike 11 months ago

Date of priority

2024-01-25 09:26 AM (UTC)