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Chloroploca asiaticaTs

Citation

Formal styling
Chloroploca asiaticaTs Gorlenko et al., 2014 (priority 2025)
Effective publication
Gorlenko et al., 2014
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pyrr8ws9 (validated)
Canonical URL
https://seqco.de/i:312 Copy

Nomenclature

Rank
Species
Syllabication
a.si.a'ti.ca
Etymology
L. fem. adj. asiatica, Asian
Nomenclatural type
NCBI Assembly: GCF_002532075.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The cells are elongated (0.5–0.7 × 1.0–3.0 μm), forming short filaments (trichomes) 15–30 μm long, covered with a thin mucous sheath. The cells in the trichomes divide by diaphragmal ingrowth of the septa. In different isolates, the trichomes may be straight, wavy, or helical. Trichomes multiply by the separation of short segments or single cells from the parental trichome. The trichomes form bunches of several filaments. In the trichomes, cell length exceeds cell with three to fivefold. The distance between the sheath and the cell wall is 0.1–0.2 μm or more. The sheath has a loose fibrous structure. Finely dispersed iron sulfide may accumulate in the sheaths. Two trichomes may occupy the same sheath in rare cases. No motility of the trichomes was detected. The cells contain gas vacuoles located close to the cell septa. Poly-β-hydroxybutyrate and small polyphosphate granules may be present as storage compounds. Gram staining is variable. The cell wall structure is not typical of gram-negative bacteria. The typical gram-negative outer membrane is not revealed. The cell envelope consists of several layers. Antennal photosynthetic structures (chlorosomes) are located below the cytoplasmic membrane. Bacteriochlorophyll c is the major pigment. Bacteriochlorophyll a is present in minor amounts. The main carotenoid is γcarotene (at least 90%). Absorption maxima of the pigments in the cells are at 462, (515—shoulder), 742, 805, and 863 nm
Classification
Bacteria » Chloroflexota » Chloroflexia » Chloroflexales » Chloroflexaceae » Chloroploca » Chloroploca asiaticaTs
Parent
Chloroploca gtdb assigned in Gorlenko et al., 2014

Genomics

Accession
NCBI Assembly:GCF_002532075.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.69%
  • Contamination: 0.19%
  • Quality: 98.74
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
80.0 ×
Source
Other features
  • G+C Content: 58.8%
  • Coding Density: 89.77%
  • Codon Table: 11
  • N50: 85,750 bp
  • Contigs: 200
  • Largest Contig: 380,923 bp
  • Assembly Length: 5,841,167 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 2 years ago and claimed 4 months ago by Grouzdev, Denis
Submitted
2 months ago by Grouzdev, Denis
Curators
Validated
About 1 month ago by Rodriguez-R, Luis M
Date of priority
2025-06-15 11:55 AM (UTC)

Publications
4

Citation Title
Bryantseva et al., 2021, FEMS Microbiology Letters ‘Candidatus Chloroploca mongolica’ sp. nov. a new mesophilic filamentous anoxygenic phototrophic bacterium
Oren et al., 2020, International Journal of Systematic and Evolutionary Microbiology Lists of names of prokaryotic Candidatus taxa
Grouzdev et al., 2018, Standards in Genomic Sciences Draft genome sequences of ‘Candidatus Chloroploca asiatica’ and ‘Candidatus Viridilinea mediisalina’, candidate representatives of the Chloroflexales order: phylogenetic and taxonomic implications
Gorlenko et al., 2014, Microbiology Candidatus ‘Chloroploca asiatica’ gen. nov., sp. nov., a new mesophilic filamentous anoxygenic phototrophic bacterium
Effective publication
Assigned this taxon


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