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Methanoliparum thermophilumTs

Citation

Formal styling
Methanoliparum thermophilumTs Borrel et al., 2019 (valid 2024)
Effective publication
Borrel et al., 2019
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pbj4my08 (validated)
Cannonical URL
https://seqco.de/i:32048

Nomenclature

Rank
Species
Syllabication
ther.mo.phi'lum
Etymology
Gr. n. thermê, heat; N.L. neut. adj. suff. -philum, friend, loving (from Gr. adj. philos -ê -on); N.L. neut. adj. thermophilum, heat-loving
Nomenclatural type
NCBI Assembly: GCA_004212075.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This organism is not isolated. It is represented by a near-complete MAG, NM1a, (GCA_004212075.1) obtained from an enrichment culture (50°C) using biodegraded oil as inoculum from Brazil. Analyses of enrichment cultures (Borrel et al., 2019; Laso-Perez et al., 2019; Zhou et al., 2022) indicate that this organism can utilize long-chain alkanes as substrate for methanogenesis.
Classification
Archaea » Methanobacteriota » Methanoliparia » Methanoliparales » Methanoliparaceae » Methanoliparum » Methanoliparum thermophilumTs
Parent
Methanoliparum gtdb

Genomics

Accession
NCBI Assembly:GCA_004212075.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.5%
  • Contamination: 1.3%
  • Quality: 86.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
11.0 ×
Source
Other features
  • G+C Content: 35.7%
  • Coding Density: 89.41%
  • Codon Table: 11
  • N50: 192,136 bp
  • Contigs: 12
  • Largest Contig: 319,195 bp
  • Assembly Length: 1,257,141 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Coverage was evaluated with Bowtie2. Completness and contamination were assessed with CheckM (v1).
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Borrel, Guillaume 11 months ago
Submitted by
Borrel, Guillaume 20 days ago
Curators
Validated by
Palmer, Marike 5 days ago
Date of priority
2024-05-29 01:10 PM (UTC)

Publications
3

Citation Title
Zhou et al., 2022, Nature Non-syntrophic methanogenic hydrocarbon degradation by an archaeal species
Laso-Pérez et al., 2019, mBio Anaerobic Degradation of Non-Methane Alkanes by “ Candidatus Methanoliparia” in Hydrocarbon Seeps of the Gulf of Mexico
Borrel et al., 2019, Nature Microbiology Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea
Effective publication


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