Blastopirellula sediminis


Citation

Formal styling
Blastopirellula sediminis Sreya et al., 2023 (valid 2024)
Effective publication
Sreya et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:du78m-se (validated)
Canonical URL
https://seqco.de/i:32824

Nomenclature

Rank
Species
Syllabication
se.di.mi'nis
Etymology
L. gen. n. sediminis, of sediment
Nomenclatural type
NCBI Assembly: GCA_020966755.1
Reference strain
JC732
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are oval, round, or pear-shaped with cream-coloured pigmentation, and size varying from 1.2–1.6 X 0.9–1.1 µm. Cells divide by budding and grow at a range of 20–30 °C (optimum 30 °C), pH 6.0–9.0 (optimum pH 7.0), and NaCl concentrations of 1–4% (optimum 2%). Catalase and oxidase positive. Vitamin B12 is not required for growth. The predominant fatty acids are C18: 1ω9c and C16: 0. Polyamines include sym-homospermidine, putrescine, and two unidentified polyamines. The type genome material is obtained from the reference strain Blastopirellula sediminis JC732. The genomic G + C content of the type strain is 58.9% and the genome size is 7.1 Mb.

The 16S rRNA gene and genome accession number of reference strain JC732 is HG996462 and JAJKFT000000000, respectively. Strain JC733 is an additional strain of the species with the 16S rRNA gene accession number HG996480 and genome accession number JAJKFU000000000.

Classification
Bacteria » Planctomycetota » Planctomycetia » Pirellulales » Pirellulaceae » Blastopirellula » Blastopirellula sediminis
Parent
Blastopirellula ncbigtdb

Genomics

Accession
NCBI Assembly:GCA_020966755.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 94.3%
  • Contamination: 1.9%
  • Quality: 84.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 79.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 58.94%
  • Coding Density: 87.81%
  • Codon Table: 11
  • N50: 4,071,442 bp
  • Contigs: 10
  • Largest Contig: 4,071,442 bp
  • Assembly Length: 7,051,236 bp
  • Ambiguous Assembly Fraction: 0.0063%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chintalapati, Venkata Ramana about 1 year ago
Submitted by
Chintalapati, Venkata Ramana about 1 year ago
Curators
Endorsed by
Palmer, Marike about 1 year ago
Validated by
Rodriguez-R, Luis M 10 months ago
Date of priority
2024-01-19 06:19 AM (UTC)

Publications
1

Citation Title
Sreya et al., 2023, Antonie van Leeuwenhoek Blastopirellula sediminis sp. nov. a new member of Pirellulaceae isolated from the Andaman and Nicobar Islands
Effective publication



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