Endomicrobium neocapritermitis

Citation

Formal styling

Endomicrobium neocapritermitis Mies et al., 2024

Effective publication

Mies et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tm1bm3q2 (validated)

Canonical URL

https://seqco.de/i:32905

Nomenclature

Rank

Species

Syllabication

ne.o.ca.pri.ter'mi.tis

Etymology

N.L. gen. n. neocapritermitis, of Neocapritermes, referring to the termite host genus.

Nomenclatural type

NCBI Assembly: GCA_009778325.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species comprises only metagenome-assembled genomes. The species includes all bacteria with more than 95% average nucleotide identity (ANI) to the type genome. The GC content of the type genome is 39.7 mol% and the estimated genome size is 2.4 Mbp.

Classification

Bacteria » Elusimicrobiota » Endomicrobiia » Endomicrobiales » Endomicrobiaceae » Endomicrobium » Endomicrobium neocapritermitis

Parent

Endomicrobium

Genomics

Accession

NCBI Assembly:GCA_009778325.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.75%
• Contamination: 1.12%
• Quality: 92.15

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 30.0%)
• tRNAs for 19 amino acids

Sequencing depth

189.8 ×

Source

• BioSample: SAMN12582100
• BioSample: SAMN03344612

Other features

• G+C Content: 39.7%
• Coding Density: 91.17%
• Codon Table: 11
• N50: 60,537 bp
• Contigs: 54
• Largest Contig: 153,372 bp
• Assembly Length: 2,380,768 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_009778325.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Endomicrobium neocapritermitis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 5 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Mies, Undine Sophie about 1 year ago

Submitted by

Mies, Undine Sophie 5 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 5 months ago

Date of priority

2024-05-29 02:02 PM (UTC)