Electrothrix rattekaaiensis

Citation

Formal styling

Electrothrix rattekaaiensis Plum-Jensen et al., 2024

Effective publication

Plum-Jensen et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:lmyvwfoa (validated)

Canonical URL

https://seqco.de/i:33364

Nomenclature

Rank

Species

Syllabication

rat.te.kaai.en'sis

Etymology

N.L. fem. adj. rattekaaiensis, from Rattekaai, referring to the location of sample collection

Nomenclatural type

NCBI Assembly: GCA_032595675.1

Reference strain

Rat3

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Filamentous bacteria of centimeter length that inhabit the surface of brackish/intertidal sediment and conduct electrons from sulfide-oxidizing cells to oxygen-reducing cells. Gliding motility. Gram-negative, with 15 distinct ridges running longitudinally along the filament. Width of individual cells is 1.2 µm. Can assimilate acetate and propionate; CO2 fixation via the Wood-Ljungdahl pathway. Contains c-type cytochromes, type IV pili (PilA) and Na+antiporters. Polyphosphate and polyglucose storage. Distinguishable by morphology and genome.

Notes

First enrichment from marine estuarine sediment at Rattekaai harbour, Zeeland, The Netherlands; published together with the genome and proposal for valid publication under the SeqCode by Plum-Jensen et al., 2024.

Classification

Bacteria » Desulfobacterota » Desulfobulbia » Desulfobales » Desulfobulbaceae » Electrothrix » Electrothrix rattekaaiensis

Parent

Electrothrix

Genomics

Accession

NCBI Assembly:GCA_032595675.1

Type

Enrichment Genome

Estimated Quality Metrics

• Completeness: 96.19%
• Contamination: 0.72%
• Quality: 92.59

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

57.0 ×

Source

• BioSample: SAMN36504010
• BioSample: SRS18389645

Other features

• G+C Content: 48.35%
• Coding Density: 87.17%
• Codon Table: 11
• N50: 2,691,434 bp
• Contigs: 5
• Largest Contig: 2,691,434 bp
• Assembly Length: 4,477,327 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Hybrid assembly of Illumina and Nanopore reads, quality check by CheckM2

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_032595675.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Electrothrix rattekaaiensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Schramm, Andreas almost 1 year ago

Submitted by

Schramm, Andreas 10 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 10 months ago

Validated by

Palmer, Marike 10 months ago

Date of priority

2024-02-27 01:47 AM (UTC)