Pelagadaptatus aseana^Ts

Citation

Formal styling

Pelagadaptatus aseana^Ts Ho et al., 2025

Effective publication

Ho et al., 2025

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:7vdf8rw3 (validated)

Canonical URL

https://seqco.de/i:34343

Nomenclature

Rank

Species

Syllabication

a.se.a'na

Etymology

N.L. fem. n. aseana, derived from the acronym for Association of Southeast Asian Nations, ASEAN

Nomenclatural type

INSDC Nucleotide: BAABNI000000000.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A marine bacterium sequenced from metagenomics analysis of tropical seawater around a southern island of Singapore.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Cellvibrionales » Cellvibrionaceae » Pelagadaptatus » Pelagadaptatus aseana^Ts

Parent

Pelagadaptatus

Genomics

Accession

INSDC Nucleotide:BAABNI000000000.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.53%
• Contamination: 1.29%
• Quality: 93.07

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 16 amino acids

Sequencing depth

61.8 ×

Source

• BioSample: SAMD00738017
• BioSample: SAMD00732050

Other features

• G+C Content: 52.3%
• Coding Density: 91.21%
• Codon Table: 11
• N50: 262,903 bp
• Contigs: 25
• Largest Contig: 490,396 bp
• Assembly Length: 3,461,300 bp
• Ambiguous Assembly Fraction: 0.0061%

Submitter comments

Raw reads were filtered using the Kneaddata pipeline v0.7.7 (https://github.com/biobakery/kneaddata) where human contaminations and low-quality reads were filtered before constructing the initial assembly via metaSPAdes v3.13.0 with default parameters. The binning, bin refinement, bin reassembly, and initial bin taxonomy classification were then performed using the metaWRAP pipeline v1.3 with the quality threshold for the bins set at >50% completeness and <10% contamination rate. The taxonomy of the final bins was further assessed using GTDB-Tk v2.1.1 using the Genome Taxonomy Database release 214. MAGs were accessed for completeness and contamination using CheckM v1.2.2 

Automated checks

Complete

See additional details

---

Last modified 28 days ago

Metadata

Outside links and data sources

• Wikispecies: Pelagadaptatus aseana

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 7 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Low, Adrian, created about 1 year ago

Submitted by

Low, Adrian about 1 year ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Rodriguez-R, Luis M about 1 year ago

Validated by

Palmer, Marike 7 days ago

Date of priority

2025-04-01 01:04 AM (UTC)