Tityobacter terrigena^Ts

Citation

Formal styling

Tityobacter terrigena^Ts Ji et al., 2021 (valid 2024)

Effective publication

Ji et al., 2021

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tgimo_87 (validated)

Canonical URL

https://seqco.de/i:43380

Nomenclature

Rank

Species

Syllabication

ter.ri.ge'na

Etymology

L. masc. adj. terrigena, born of or from the earth; L. masc. adj. terrigena, earth-born; in reference to the recovery from soil

Nomenclatural type

NCBI Assembly: GCA_003156715.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Heterotroph and autotroph. CO oxidation. Hydrogenotrophic chemolithoautotrophy using Group 1h [NiFe] hydrogenase and CBB cycle; capable of using atmospheric H2. Organic substrates include peptides, amino acids, carboxylates, glycerol, taurine, acetate, alcohols (including methanol, ethanol, polyvinyl alcohol), aldehydes, poly- and oligosaccharides, sugars, fluoroacetate, catechol. Glycogen storage. Polyphosphate storage. BMC for sequestering toxic metabolites. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.

Classification

Bacteria » Eremiobacterota » Eremiobacteria » “Baltobacterales” » “Baltobacteraceae” » Tityobacter » Tityobacter terrigena^Ts

Parent

Tityobacter gtdb

Genomics

Accession

NCBI Assembly:GCA_003156715.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.37%
• Contamination: 3.25%
• Quality: 77.12

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 21 amino acids

Sequencing depth

23.8 ×

Source

• BioSample: SAMN08179631
• BioSample: SAMN07125010

Other features

• G+C Content: 64.5%
• Coding Density: 91.55%
• Codon Table: 11
• N50: 100,401 bp
• Contigs: 66
• Largest Contig: 336,302 bp
• Assembly Length: 3,946,374 bp
• Ambiguous Assembly Fraction: 0.026%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_003156715.1
• GTDB Tree: s__Tityobacter terrigena
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Tityobacter terrigena (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 8 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Ferrari, Belinda 3 months ago

Submitted by

Ferrari, Belinda 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 8 days ago

Date of priority

2024-10-17 12:47 AM (UTC)