Tharpella aukensis^Ts

Citation

Formal styling

Tharpella aukensis^Ts Speth et al., 2022 (valid 2024)

Effective publication

Speth et al., 2022

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:fum1lymc (validated)

Canonical URL

https://seqco.de/i:43695

Nomenclature

Rank

Species

Syllabication

a.u.ken'sis

Etymology

L. fem. adj. aukensis, pertaining to the Auka vent field, where this species was discovered

Nomenclatural type

NCBI Assembly: GCA_021163445.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A bacterial species identified by metagenomic analyses. This species includes all bacteria with genomes that show ≥95% average nucleotide identity to the type genome for the species to which we have assigned the MAG ID PB_MBMC_085 and which is available via NCBI BioSample SAMN18353627 and NCBI GenBank accession GCA_021163445.1.

Classification

Bacteria » Desulfobacterota » “Anaeroferrophillalia” » “Anaeroferrophillales” » Tharpellaceae » Tharpella » Tharpella aukensis^Ts

Parent

Tharpella gtdb

Genomics

Accession

NCBI Assembly:GCA_021163445.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.86%
• Contamination: 0.29%
• Quality: 89.41

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 30.0%)
• tRNAs for 21 amino acids

Sequencing depth

19.0 ×

Source

• SRA: SRR14000031
• And 7 more…

Other features

• G+C Content: 46.0%
• Coding Density: 87.93%
• Codon Table: 11
• N50: 11,007 bp
• Contigs: 363
• Largest Contig: 38,684 bp
• Assembly Length: 3,104,799 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

quality metrics based on CheckM2, as run by the GTDB 

Automated checks

Complete

See additional details

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Last modified about 2 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_021163445.1
• GTDB Tree: s__Tharpella aukensis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Tharpella aukensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 14 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Speth, Daan, created 2 months ago

Submitted by

Speth, Daan about 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 14 days ago

Date of priority

2024-11-27 10:20 AM (UTC)