Epilinea brevisTs


Citation

Formal styling
Epilinea brevisTs Petriglieri et al., 2023 (valid 2024)
Effective publication
Petriglieri et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:82uy5hy3 (validated)
Canonical URL
https://seqco.de/i:43954

Nomenclature

Rank
Species
Syllabication
bre'vis
Etymology
L. fem. adj. brevis, short
Nomenclatural type
NCBI Assembly: GCA_016710785.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species is established on the same basis as the genus and the type material is the genome Hirt_BATAC.427. Fluorescence in situ hybridization with genus-specific FISH probes shows filamentous morphology (4-57 × 0.4-0.7 µm).
Classification
Bacteria » Chloroflexota » Anaerolineae » Epilineales » Epilineaceae » Epilinea » Epilinea brevisTs
Parent
Epilinea gtdb assigned in Petriglieri et al., 2023

Genomics

Accession
NCBI Assembly:GCA_016710785.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.02%
  • Contamination: 1.1%
  • Quality: 90.52
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
17.0 ×
Source
Other features
  • G+C Content: 69.08%
  • Coding Density: 88.12%
  • Codon Table: 11
  • N50: 673,794 bp
  • Contigs: 13
  • Largest Contig: 785,493 bp
  • Assembly Length: 4,924,095 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination values were evaluates using CheckM v1.0.11. dRep v2.3.2 at 95% ANI clustering was used to indicate the number of distinct species. Prokka v1.14 and Infernal v1.1.2 were used to identify the 16S, 23S, 5S rRNA, and tRNA genes.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Petriglieri, Francesca 10 months ago
Submitted by
Petriglieri, Francesca 8 months ago
Curators
Validated by
Rodriguez-R, Luis M 6 months ago
Date of priority
2024-04-26 11:27 AM (UTC)

Publications
1

Citation Title
Petriglieri et al., 2023, mSystems A comprehensive overview of the Chloroflexota community in wastewater treatment plants worldwide
Effective publication
Assigned this taxon



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