Trichofilum aggregatum^Ts

Citation

Formal styling

Trichofilum aggregatum^Ts Petriglieri et al., 2023 (valid 2024)

Effective publication

Petriglieri et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:82uy5hy3 (validated)

Canonical URL

https://seqco.de/i:43985

Nomenclature

Rank

Species

Syllabication

ag.gre.ga'tum

Etymology

L. neut. adj. aggregatum, indicating the bundles often formed with other filaments

Nomenclatural type

NCBI Assembly: GCA_016716885.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species is established on the same basis as the genus and the type material is the genome Hirt_MAXAC.142. Fluorescence in situ hybridization with genus-specific FISH probes shows filamentous morphology (60-200 × 0.6-0.8 µm).

Classification

Bacteria » Chloroflexota » Anaerolineae » Promineifilales » Promineifilaceae » Trichofilum » Trichofilum aggregatum^Ts

Parent

Trichofilum gtdb assigned in Petriglieri et al., 2023

Genomics

Accession

NCBI Assembly:GCA_016716885.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.73%
• Contamination: 4.0%
• Quality: 70.73

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

11.0 ×

Source

• BioSample: SAMN16426120
• BioSample: SAMN14825699

Other features

• G+C Content: 54.5%
• Coding Density: 83.49%
• Codon Table: 11
• N50: 55,268 bp
• Contigs: 204
• Largest Contig: 312,407 bp
• Assembly Length: 7,738,549 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_016716885.1
• GTDB Tree: s__Trichofilum aggregatum
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Trichofilum aggregatum (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Petriglieri, Francesca 10 months ago

Submitted by

Petriglieri, Francesca 8 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)
• Valero Tebar, Juan

Validated by

Rodriguez-R, Luis M 6 months ago

Date of priority

2024-04-26 11:27 AM (UTC)