Fervidibacter sinensis

Citation

Formal styling

Fervidibacter sinensis Nou et al., 2024

Effective publication

Nou et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:x3m88du8 (validated)

Canonical URL

https://seqco.de/i:44079

Nomenclature

Rank

Species

Syllabication

si.nen'sis

Etymology

N.L. masc. adj. sinensis, of China, the country where this organism is from

Nomenclatural type

INSDC Nucleotide: JAVHTH000000000

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Genomes of this species were recovered from metagenomes from geothermal springs in Tengchong, China. GC content range between 50% and 52%. The a subunit of the high-affinity cytochrome bd ubiquinol oxidase (CydA) are encoded by the genomes of the species, but no low-affinity terminal oxidases are encoded.

Classification

Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter » Fervidibacter sinensis

Parent

Fervidibacter

Genomics

Accession

INSDC Nucleotide:JAVHTH000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.6%
• Contamination: 1.9%
• Quality: 87.1

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

187.0 ×

Source

• SRA: SRX22851833

Other features

• G+C Content: 50.5%
• Coding Density: 90.39%
• Codon Table: 11
• N50: 106,189 bp
• Contigs: 67
• Largest Contig: 328,071 bp
• Assembly Length: 3,518,073 bp
• Ambiguous Assembly Fraction: 0.054%

Submitter comments

Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.

Automated checks

Complete

See additional details

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Last modified 2 months ago

Metadata

Outside links and data sources

• Wikispecies: Fervidibacter sinensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 2 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike, created 10 months ago

Submitted by

Palmer, Marike 10 months ago

Curators

• St. John, Emily (nomenclature)
• Van Lill, Melandre
• Valero Tebar, Juan
• Rodriguez-R, Luis M (genomics)

Endorsed by

Rodriguez-R, Luis M 6 months ago

Validated by

St. John, Emily about 2 months ago

Date of priority

2024-11-20 02:57 PM (UTC)