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Fervidibacter sinensis

Citation

Formal styling
Fervidibacter sinensis Nou et al., 2024
Effective publication
Nou et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:x3m88du8 (validated)
Canonical URL
https://seqco.de/i:44079

Nomenclature

Rank
Species
Syllabication
si.nen'sis
Etymology
N.L. masc. adj. sinensis, of China, the country where this organism is from
Nomenclatural type
INSDC Nucleotide: JAVHTH000000000
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Genomes of this species were recovered from metagenomes from geothermal springs in Tengchong, China. GC content range between 50% and 52%. The a subunit of the high-affinity cytochrome bd ubiquinol oxidase (CydA) are encoded by the genomes of the species, but no low-affinity terminal oxidases are encoded.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter » Fervidibacter sinensis
Parent
Fervidibacter

Genomics

Accession
INSDC Nucleotide:JAVHTH000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.6%
  • Contamination: 1.9%
  • Quality: 87.1
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
187.0 ×
Source
Other features
  • G+C Content: 50.5%
  • Coding Density: 90.39%
  • Codon Table: 11
  • N50: 106,189 bp
  • Contigs: 67
  • Largest Contig: 328,071 bp
  • Assembly Length: 3,518,073 bp
  • Ambiguous Assembly Fraction: 0.054%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike 9 months ago
Submitted by
Palmer, Marike 9 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 5 months ago
Validated by
St. John, Emily 29 days ago
Date of priority
2024-11-20 02:57 PM (UTC)

Publications
1

Citation Title
Nou et al., 2024, Nature Communications Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Effective publication


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