Symbiodolus clandestinus^Ts

Citation

Formal styling

Symbiodolus clandestinus^Ts Wierz et al., 2024

Effective publication

Wierz et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:ysrrov43 (validated)

Canonical URL

https://seqco.de/i:44107

Nomenclature

Rank

Species

Syllabication

clan.de.sti'nus

Etymology

L. masc. adj. clandestinus, secret or hidden

Nomenclatural type

INSDC Nucleotide: CP152425.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Monophyletic clade of intracellular symbionts within the Gammaproteobacteria; Enterobacterales, defined by its 16S rRNA gene sequences as well as (draft) genomes of 16 symbiont strains associated with insects across six different orders. For this so far uncultured, rod-shaped bacterium with an average length of about 1 µm, we propose the name ‘Symbiodolus clandestinus' gen. nov. sp. nov.

Notes

This newfound bacterial symbiont forms a monophyletic clade formed by 22 (draft-) genomes and thus we believe represents its own genus.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Enterobacteriaceae » Symbiodolus » Symbiodolus clandestinus^Ts

Parent

Symbiodolus

Genomics

Accession

INSDC Nucleotide:CP152425.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 1.0%
• Quality: 95.0

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

317.0 ×

Source

• SRA: SRX23536579
• SRA: SRX23536580
• SRA: SRX23536581

Other features

• G+C Content: 45.0%
• Coding Density: 84.94%
• Codon Table: 11
• N50: 1,499,781 bp
• Contigs: 1
• Largest Contig: 1,499,781 bp
• Assembly Length: 1,499,781 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Symbiodolus clandestinus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 2 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Wierz, Jürgen 7 months ago

Submitted by

Wierz, Jürgen 6 months ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike (nomenclature)
• Valero Tebar, Juan (genomics)

Endorsed by

Rodriguez-R, Luis M 5 months ago

Validated by

Rodriguez-R, Luis M 2 months ago

Date of priority

2024-08-18 01:10 PM (UTC)