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Liberimonas magneticaTs

Citation

Formal styling
Liberimonas magneticaTs Uzun et al., 2023 (priority 2025)
Effective publication
Uzun et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:omoyirye (validated)
Canonical URL
https://seqco.de/i:45212 Copy

Nomenclature

Rank
Species
Syllabication
mag.ne'ti.ca
Etymology
L. fem. adj. magnetica, magnetic
Nomenclatural type
NCBI Assembly: GCA_020523885.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Potentially has a fermentation-based metabolism. Has the capacity to produce lactate and acetate as fermentation products. Has the potential for autotrophic growth with hydrogen and carbon dioxide via the Wood-Ljungdahl pathway. Predicted unable to assimilate nitrite or nitrate and unable to fix nitrogen. Sulfur is likely assimilated through sulfate reduction. Supposedly capable of twitching motility. Was collected on magnetic column from waterlogged soil of the Durykino ravine. The reference strain is DUR002. The genome reference sequence of DUR002 is JAJAPY000000000. G+C content 39.76%.
Classification
Bacteria » Elusimicrobiota » Endomicrobiia » Endomicrobiales » “Liberimonadaceae” » Liberimonas » Liberimonas magneticaTs
Parent
Liberimonas gtdb assigned in Uzun et al., 2023

Genomics

Accession
NCBI Assembly:GCA_020523885.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.4%
  • Contamination: 0.0%
  • Quality: 94.4
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
218.6 ×
Source
Other features
  • G+C Content: 39.76%
  • Coding Density: 91.48%
  • Codon Table: 11
  • N50: 185,704 bp
  • Contigs: 29
  • Largest Contig: 432,506 bp
  • Assembly Length: 3,394,123 bp
  • Ambiguous Assembly Fraction: 0.012%
Submitter comments
The quality metrics were assessed using QUAST v5.0.2. Genome completeness and contamination were estimated using CheckM v1.2.0.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Grouzdev, Denis, created about 1 year ago and claimed about 1 month ago
Submitted by
Grouzdev, Denis about 1 month ago
Curators
Validated by
Palmer, Marike 10 days ago
Date of priority
2025-04-07 03:08 PM (UTC)

Publications
1

Citation Title
Uzun et al., 2023, The ISME Journal Recovery and genome reconstruction of novel magnetotactic Elusimicrobiota from bog soil
Effective publication
Assigned this taxon


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