Salinivivens marinus^Ts

Citation

Formal styling

Salinivivens marinus^Ts Prabhu et al., 2024

Effective publication

Prabhu et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:sfdglxu8 (validated)

Canonical URL

https://seqco.de/i:46736

Nomenclature

Rank

Species

Syllabication

ma.ri'nus

Etymology

L. masc. adj. marinus, of the sea

Nomenclatural type

NCBI Assembly: GCA_038142605.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Inferred to break down a wide range of organic carbon substrates (Chitin, Pectin, Cellulose and Starch). Capable of performing aerobic anoxygenic photosynthesis (pufLM), and thiosulfate oxidation (soxABCDXYZ), likely performing osmoregulation using trk1 (K+ transporter) and proXV (Glycine betaine) and inferred to be motile (fliGMN, motAB gene). Also carries genes for phosphorus uptake and regulation(pho, pst). Based on the genome reporting standards for MAGs , the estimated completeness 94.41%, contamination 0.3%, and the presence of the 5S (108 bp), 16S (1,457 bp), and 23S (2, 718bp) rRNA gene and 32 tRNAs. Type genome is defined as “high-quality” draft MAG, with genome size of 2.6 Mbps

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Salinivivens » Salinivivens marinus^Ts

Parent

Salinivivens

Genomics

Accession

NCBI Assembly:GCA_038142605.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.41%
• Contamination: 0.3%
• Quality: 92.91

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Source

• BioSample: SAMN37862324
• BioSample: SAMN38034107

Other features

• G+C Content: 40.5%
• Coding Density: 90.97%
• Codon Table: 11
• N50: 712,863 bp
• Contigs: 25
• Largest Contig: 738,016 bp
• Assembly Length: 2,667,129 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were evaluated using CheckM v 1.1.3

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_038142605.1
• Wikispecies: Salinivivens marinus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 4 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria 7 months ago

Submitted by

Chuvochina, Maria 4 months ago

Curators

• Palmer, Marike (nomenclature)
• Valero Tebar, Juan
• Rodriguez-R, Luis M (genomics)

Validated by

Rodriguez-R, Luis M 4 months ago

Date of priority

2024-08-12 01:22 AM (UTC)