Eutrophobius brisbanensis^Ts

Citation

Formal styling

Eutrophobius brisbanensis^Ts Prabhu et al., 2024

Effective publication

Prabhu et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:sfdglxu8 (validated)

Canonical URL

https://seqco.de/i:46746

Nomenclature

Rank

Species

Syllabication

bris.ban.en'sis

Etymology

N.L. masc. adj. brisbanensis, of or belonging to Brisbane

Nomenclatural type

NCBI Assembly: GCA_038131795.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Inferred to break down a Chitin and Cellulose as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Likely performing sulfate assimilation (cys), polyphosphate accumulation (ppk1) and osmoregulation (trkA, nqrF, mnh). Based on the genome reporting standards for MAGs , the estimated completeness was 98.24%, contamination 0.88%, and the presence of the 5S (110bp), 16S (1.540 bp), and 23S (2,877 bp) rRNA gene and 46 tRNAs. Type genome is defined as “high-quality” draft MAG,with genome size of 2.7Mbps.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Eutrophobiales » Eutrophobiaceae » Eutrophobius » Eutrophobius brisbanensis^Ts

Parent

Eutrophobius

Genomics

Accession

NCBI Assembly:GCA_038131795.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.24%
• Contamination: 0.88%
• Quality: 93.84

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Source

• BioSample: SAMN37862055
• BioSample: SAMN37699808

Other features

• G+C Content: 45.5%
• Coding Density: 91.15%
• Codon Table: 11
• N50: 2,524,515 bp
• Contigs: 9
• Largest Contig: 2,524,515 bp
• Assembly Length: 2,748,242 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were evaluated using CheckM v 1.1.3

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_038131795.1
• Wikispecies: Eutrophobius brisbanensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 4 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria 7 months ago

Submitted by

Chuvochina, Maria 4 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 4 months ago

Date of priority

2024-08-12 01:22 AM (UTC)